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Bookkeeping software when you also run payroll

You pay staff, so payroll support weighs heavily in the ranking. Payroll is often a separate paid add-on, so check what each vendor charges for it.

US list prices in USD, read from each vendor's public pricing page on Nov 14, 2026. Intro discounts are not counted. Sources.

Top matches for businesses with employees

We scored a typical setup: 3 users, about 10 invoices a month, payroll, an accountant. Your answers may differ, so the quiz is the better test.

Your match

1. QuickBooks Online

  • Strong payroll support
  • Widely used by accountants
  • Handles several users well

Paid plans from $38/mo.

Visit QuickBooks Online

2. Xero

  • Widely used by accountants
  • Handles several users well

Paid plans from $27/mo.

Visit Xero

3. FreshBooks

  • Strong invoicing
  • Easy to learn

Paid plans from $23/mo.

Visit FreshBooks

All five, scored

ToolFit scoreCheapest option
QuickBooks Online27Paid plans from $38/mo.
Xero24Paid plans from $27/mo.
FreshBooks18Paid plans from $23/mo.
Zoho Books17Free plan available. Paid plans from $20/mo.
Wave16Free plan available. Paid plans from $19/mo.

Fit score is the sum of weighted ratings on How we score. Higher is a better fit.

Fit ratings

Our fit ratingQuickBooks OnlineXeroFreshBooksZoho BooksWave
PayrollStrongGoodLimitedLimitedLimited
InventoryStrongGoodMinimal or noneStrongMinimal or none
InvoicingGoodGoodStrongGoodStrong
Accountant accessStrongStrongGoodGoodLimited
Several usersStrongStrongLimitedGoodLimited
Ease of learningGoodGoodStrongGoodStrong
Free planMinimal or noneMinimal or noneMinimal or noneGoodStrong

Ratings are our editorial judgments, published on How we score. They are not vendor claims.

Take the 90-second quiz  The quiz needs no email or phone number.

General software matching only. For tax rules that apply to businesses with employees, ask a tax professional.

How we are paid. Vendor links on this site go straight to each vendor's own pricing page. They are not referral links today, so we earn no commission from them. We plan to join vendor referral programs. When those links go live they will earn us a commission, this notice will say so, and results will still ignore commissions. This is software matching, not accounting or tax advice. Read the details.